STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0378TRZ/ATZ family hydrolase, putative; GC: 49.29%; Codon Adaptation Index (CAI): 0.772. Curator(s): T. Kitten; Protein involved in hydrolase activity. (423 aa)    
Predicted Functional Partners:
pfs
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
    
 0.912
SSA_1812
Modification methylase, putative; GC: 29.83%; Codon Adaptation Index (CAI): 0.737; Protein involved in transferase activity.
   
 
  0.904
birA
Biotin--[acetyl-CoA-carboxylase] ligase, putative; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.700
metN
ABC-type methionine transporter, ATPase component, putative; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
       0.486
SSA_0377
ABC-type methionine transporter, permease component, putative; GC: 47.33%; Transporter classification TC:3.A.1.24.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.764. Curator(s): T. Kitten, J. Alves.
       0.486
SSA_0012
Beta-lactamase class A, putative; GC: 37.54%; Codon Adaptation Index (CAI): 0.812. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.979); Curator(s): J. Alves.
  
    0.428
SSA_0379
PTS system, beta-glucoside-specific EII component, putative; GC: 44.98%; Transporter classification TC:4.A.1.2.6. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.805. Curator(s): T. Kitten.
       0.413
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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