STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0384Conserved hypothetical protein; GC: 43.15%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.803. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.997); Curator(s): T. Kitten; Protein involved in peptidase activity. (709 aa)    
Predicted Functional Partners:
SSA_0617
Membrane protease subunits, stomatin/prohibitin-like protein (SPFH domain/band 7 family), putative; GC: 44.83%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.805. SignalP prediction: Yes (prob. 0.698); Curator(s): P. Xu, J. Alves.
  
     0.445
bglA
Beta-glucosidase, putative; GC: 48.06%; Codon Adaptation Index (CAI): 0.785. Curator(s): T. Kitten; Protein involved in hydrolase activity, acting on glycosyl bonds; Belongs to the glycosyl hydrolase 1 family.
       0.416
SSA_0181
Glycosyltransferase (vectorial glycosyl polymerization (VGP) family), putative; GC: 43.94%; Transporter classification TC:9.B.32.1.3. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.79. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.585); Helix-turn-helix prediction: AraC. Curator(s): M. Serrano.
   
 
 0.402
SSA_1324
Ceramide glucosyltransferase, putative; GC: 44.08%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.759; Protein involved in transferase activity, transferring glycosyl groups.
   
 
 0.402
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.