STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0397Conserved hypothetical protein; GC: 38.14%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.758. Curator(s): T. Kitten. (221 aa)    
Predicted Functional Partners:
SSA_0398
Conserved hypothetical protein; GC: 45.31%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.763. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): T. Kitten, J. Alves; beta-lactamase family; Protein involved in response to antibiotic.
       0.737
SSA_0400
Conserved hypothetical protein; GC: 48.09%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.765. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): T. Kitten; beta-lactamase family; Protein involved in response to antibiotic.
       0.697
SSA_0401
Two-component response transcriptional regulator; GC: 48.75%; Codon Adaptation Index (CAI): 0.789. Curator(s): T. Kitten, J. Alves; Protein involved in sensory perception and regulation of transcription, DNA-dependent.
       0.407
SSA_0402
Histidine kinase, putative; GC: 48.4%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.769. SignalP prediction: Yes (prob. 0.46); Helix-turn-helix prediction: AraC. Curator(s): T. Kitten; Protein involved in transferase activity, transferring phosphorus-containing groups and kinase activity.
       0.407
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.