STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0403CAAX amino terminal protease family, putative; GC: 43.88%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.754. Curator(s): M. Chaplin; Protein involved in peptidase activity. (277 aa)    
Predicted Functional Partners:
SSA_0405
Transcriptional regulator, XRE family, putative; GC: 47.09%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.725. Curator(s): M. Chaplin, J. Alves; Protein involved in DNA binding and regulation of transcription, DNA-dependent.
 
   
 0.700
SSA_0407
ABC-2 type transport system ATP-binding protein; GC: 45.44%; Transporter classification TC:3.A.1.124.2. Codon Adaptation Index (CAI): 0.76. Curator(s): M. Chaplin, J. Alves; Protein involved in nucleoside-triphosphatase activity.
  
  
 0.485
SSA_0409
ABC-type multidrug transport system, ATPase component, putative; GC: 45.87%; Transporter classification TC:3.A.1.124.2. Codon Adaptation Index (CAI): 0.739. Curator(s): M. Chaplin, J. Alves; Protein involved in nucleoside-triphosphatase activity.
  
  
 0.476
SSA_0412
ABC-2 type transport system ATP-binding protein; GC: 48.73%; Transporter classification TC:3.A.1.124.2. Codon Adaptation Index (CAI): 0.74. Curator(s): M. Chaplin, J. Alves; Protein involved in nucleoside-triphosphatase activity.
  
  
 0.470
SSA_0253
CAAX amino terminal protease family protein, putative; GC: 39.51%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.752. Curator(s): P. Manque, J. Alves.
  
   
 0.446
SSA_1357
Membrane protein, putative; GC: 42.83%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.781.
  
     0.421
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.