STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0445Hypothetical protein; GC: 37.14%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.721. SignalP prediction: Yes (prob. 0.999); Curator(s): M. Chaplin. (69 aa)    
Predicted Functional Partners:
SSA_0443
Possible ABC-type efflux pump permease component, putative; GC: 41.28%; Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.726. Curator(s): M. Chaplin, J. Alves.
       0.812
SSA_0442
ABC-type multidrug transport system, ATPase component, putative; GC: 40.62%; Transporter classification TC:3.A.1.211.3. Codon Adaptation Index (CAI): 0.727. Curator(s): M. Chaplin, J. Alves; Protein involved in nucleoside-triphosphatase activity.
       0.779
SSA_0441
Conserved hypothetical protein; GC: 40.16%; Codon Adaptation Index (CAI): 0.793. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin; Protein involved in regulation of transcription.
       0.482
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.