STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0447Magnesium and cobalt transporter, putative; GC: 45.5%; Transporter classification TC:1.A.35.3.1. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.744. Curator(s): M. Chaplin, J. Alves; Protein involved in metal ion transporter activity. (314 aa)    
Predicted Functional Partners:
SSA_0446
Conserved hypothetical protein; GC: 48.15%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.761. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin, J. Alves.
       0.766
uvrA
Excinuclease ATPase subunit A, putative; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.587
SSA_1837
Conserved hypothetical protein; GC: 42.5%; Codon Adaptation Index (CAI): 0.795. Curator(s): J. Alves; Protein involved in molecular function unknown.
  
    0.412
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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