STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0459Hypothetical protein; GC: 44.64%; Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.734. SignalP prediction: Yes (prob. 0.983); Curator(s): M. Chaplin. (111 aa)    
Predicted Functional Partners:
SSA_0458
Formylmethionine deformylase, putative; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
       0.556
SSA_0460
Multiple antibiotic resistance operon transcription repressor (MarR), putative; GC: 42.48%; Codon Adaptation Index (CAI): 0.791. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin, J. Alves; Protein involved in regulation of transcription, DNA-dependent.
       0.458
SSA_0461
ABC-type multidrug transport system, ATPase and permease components, putative; GC: 47.43%; Transporter classification TC:3.A.1.117.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.771. Curator(s): M. Chaplin, J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
       0.458
SSA_0462
ATP-binding cassette, subfamily B, bacterial; GC: 47.33%; Transporter classification TC:3.A.1.106.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.777. SignalP prediction: Yes (prob. 0.48); Curator(s): M. Chaplin, J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
       0.458
scrK
Fructokinase, putative; GC: 47.78%; Codon Adaptation Index (CAI): 0.801. Curator(s): M. Chaplin; Protein involved in fructokinase activity and kinase activity.
       0.457
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.