STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0499ABC-type dipeptide transport system, periplasmic component, putative; GC: 45.02%; Transporter classification TC:3.A.1.5.3. Codon Adaptation Index (CAI): 0.803. Curator(s): M. Chaplin, J. Alves; Protein involved in transport. (498 aa)    
Predicted Functional Partners:
SSA_0500
Peptide ABC transporter, permease protein, putative; GC: 45.75%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.747. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): D. Akan.
 0.994
SSA_0498
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, putative; GC: 50%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.755. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): M. Chaplin, J. Alves.
 0.992
SSA_0502
Peptide ABC transporter, permease protein, putative; GC: 45.94%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.782. Curator(s): D. Akan.
 0.991
SSA_0494
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, putative; GC: 50.83%; Transporter classification TC:3.A.1.5.9. Codon Adaptation Index (CAI): 0.752. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin, J. Alves; Protein involved in nucleoside-triphosphatase activity.
 
 
 0.984
SSA_0503
Peptide ABC transporter, ATP-binding protein, putative; GC: 49.37%; Transporter classification TC:3.A.1.5.9. Codon Adaptation Index (CAI): 0.763. Curator(s): D. Akan; Protein involved in nucleoside-triphosphatase activity.
 
 
 0.983
SSA_0495
ABC-type oligopeptide/nickel transport system, ATPase component, putative; GC: 52.01%; Transporter classification TC:3.A.1.5.6. Codon Adaptation Index (CAI): 0.774. Curator(s): M. Chaplin, J. Alves; Protein involved in nucleoside-triphosphatase activity and ATP binding.
 
 
 0.982
amiF
Peptide ABC transporter, ATP-binding protein, putative; GC: 47.96%; Transporter classification TC:3.A.1.5.3. Codon Adaptation Index (CAI): 0.747. Curator(s): D. Akan; Protein involved in nucleoside-triphosphatase activity.
 
 
 0.975
SSA_0493
ABC-type dipeptide/nickel transport system, periplasmic component, putative; GC: 46.81%; Transporter classification TC:3.A.1.5.3. Codon Adaptation Index (CAI): 0.779. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): M. Chaplin, J. Alves; Protein involved in transport.
 
  
 
0.959
SSA_0497
Nickel ABC transporter, putative; GC: 49.4%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.764. SignalP prediction: Yes (prob. 0.999); Curator(s): M. Chaplin.
 
 0.938
SSA_1946
Oligopeptide transport system permease protein, putative; GC: 40.99%; Transporter classification TC:3.A.1.5.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.796.
 
 
 0.818
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.