STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0502Peptide ABC transporter, permease protein, putative; GC: 45.94%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.782. Curator(s): D. Akan. (229 aa)    
Predicted Functional Partners:
SSA_0503
Peptide ABC transporter, ATP-binding protein, putative; GC: 49.37%; Transporter classification TC:3.A.1.5.9. Codon Adaptation Index (CAI): 0.763. Curator(s): D. Akan; Protein involved in nucleoside-triphosphatase activity.
 0.999
SSA_0494
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, putative; GC: 50.83%; Transporter classification TC:3.A.1.5.9. Codon Adaptation Index (CAI): 0.752. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin, J. Alves; Protein involved in nucleoside-triphosphatase activity.
 0.998
amiF
Peptide ABC transporter, ATP-binding protein, putative; GC: 47.96%; Transporter classification TC:3.A.1.5.3. Codon Adaptation Index (CAI): 0.747. Curator(s): D. Akan; Protein involved in nucleoside-triphosphatase activity.
 0.998
SSA_0495
ABC-type oligopeptide/nickel transport system, ATPase component, putative; GC: 52.01%; Transporter classification TC:3.A.1.5.6. Codon Adaptation Index (CAI): 0.774. Curator(s): M. Chaplin, J. Alves; Protein involved in nucleoside-triphosphatase activity and ATP binding.
 0.997
SSA_0500
Peptide ABC transporter, permease protein, putative; GC: 45.75%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.747. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): D. Akan.
 0.997
SSA_1945
Oligopeptide transport ATP-binding protein, putative; GC: 43.45%; Transporter classification TC:3.A.1.5.2. Codon Adaptation Index (CAI): 0.79; Protein involved in nucleoside-triphosphatase activity; Belongs to the ABC transporter superfamily.
 
 0.997
SSA_0493
ABC-type dipeptide/nickel transport system, periplasmic component, putative; GC: 46.81%; Transporter classification TC:3.A.1.5.3. Codon Adaptation Index (CAI): 0.779. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): M. Chaplin, J. Alves; Protein involved in transport.
 0.994
SSA_0499
ABC-type dipeptide transport system, periplasmic component, putative; GC: 45.02%; Transporter classification TC:3.A.1.5.3. Codon Adaptation Index (CAI): 0.803. Curator(s): M. Chaplin, J. Alves; Protein involved in transport.
 
 0.994
SSA_1944
Oligopeptide transport ATP-binding protein, putative; GC: 40.78%; Transporter classification TC:3.A.1.5.1. Codon Adaptation Index (CAI): 0.796; Protein involved in nucleoside-triphosphatase activity; Belongs to the ABC transporter superfamily.
 
 0.973
SSA_0497
Nickel ABC transporter, putative; GC: 49.4%; Transporter classification TC:3.A.1.5.3. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.764. SignalP prediction: Yes (prob. 0.999); Curator(s): M. Chaplin.
 
 0.953
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.