STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0574YdjX protein, putative; GC: 46.41%; Transporter classification TC:9.B.27.1.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.765. Conserved, possibly membrane-associated. Curator(s): D. Akan, J. Alves. (208 aa)    
Predicted Functional Partners:
cpoA
Glycosyl transferase, putative; GC: 44.95%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.776; Protein involved in transferase activity and biosynthesis.
 
  
 0.738
SSA_0664
Conserved uncharacterized protein; GC: 35.97%; Codon Adaptation Index (CAI): 0.798. Curator(s): P. Xu, J. Alves.
  
     0.606
SSA_0575
Hydrolase, HAD superfamily, putative; GC: 45.69%; Codon Adaptation Index (CAI): 0.762. Curator(s): D. Akan; Protein involved in metabolism.
       0.591
SSA_0576
Conserved GTPase, putative; GC: 48.15%; Codon Adaptation Index (CAI): 0.803. Curator(s): D. Akan, J. Alves; Protein involved in GTP binding.
       0.591
SSA_0573
Conserved hypothetical protein; GC: 29.91%; Codon Adaptation Index (CAI): 0.688. Curator(s): D. Akan, J. Alves.
       0.578
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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