STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dapESuccinyl-diaminopimelate desuccinylase; GC: 47.07%; Codon Adaptation Index (CAI): 0.792. Curator(s): D. Akan, J. Alves; Protein involved in protein dimerization activity. (460 aa)    
Predicted Functional Partners:
argD
Acetylornithine aminotransferase, putative; GC: 47.94%; Codon Adaptation Index (CAI): 0.776. Curator(s): X. Ge; Protein involved in pyridoxal phosphate binding; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.911
hipO
Aminoacylase/N-acyl-L-amino acid amidohydrolase/hippurate hydrolase, putative; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate.
    
 0.902
SSA_0590
Conserved hypothetical protein; GC: 44.44%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.733. Curator(s): D. Akan, J. Alves.
       0.828
SSA_0591
Conserved uncharacterized protein; GC: 47.16%; Codon Adaptation Index (CAI): 0.772. Curator(s): D. Akan, J. Alves.
       0.780
SSA_0592
Conserved hypothetical protein; GC: 46.78%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.768. SignalP prediction: Yes (prob. 0.924); Curator(s): D. Akan, J. Alves.
       0.771
SSA_0588
L-cystine ABC transporter, substrate-binding component, putative; GC: 43%; Transporter classification TC:3.A.1.3.14. Codon Adaptation Index (CAI): 0.792. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): D. Akan, J. Alves.
  
    0.718
metN
ABC-type methionine transporter, ATPase component, putative; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
     
 0.630
arc
Ornithine carbamoyltransferase, catabolic, putative; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
  
 
 0.567
SSA_0375
Lipoprotein transporter, putative; GC: 41.92%; Transporter classification TC:3.A.1.24.1. Codon Adaptation Index (CAI): 0.79. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Curator(s): T. Kitten, J. Alves; Belongs to the nlpA lipoprotein family.
       0.450
SSA_0377
ABC-type methionine transporter, permease component, putative; GC: 47.33%; Transporter classification TC:3.A.1.24.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.764. Curator(s): T. Kitten, J. Alves.
       0.450
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.