STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0595Conserved hypothetical protein; GC: 43%; Codon Adaptation Index (CAI): 0.784. Curator(s): D. Akan, J. Alves. (137 aa)    
Predicted Functional Partners:
SSA_0596
Hypothetical protein; GC: 42.78%; Codon Adaptation Index (CAI): 0.8. Curator(s): D. Akan, J. Alves.
 
     0.820
SSA_0594
Transcriptional regulator, AraC family, putative; GC: 43.66%; Codon Adaptation Index (CAI): 0.78. Helix-turn-helix prediction: AraC. Curator(s): D. Akan, J. Alves; Protein involved in regulation of transcription and regulation of transcription, DNA-dependent.
  
    0.700
nadR
ATPase/kinase, putative; GC: 45.33%; Codon Adaptation Index (CAI): 0.804. Possibly involved in NAD metabolism. Curator(s): J. Alves; Protein involved in nucleotidyltransferase activity and regulation of transcription.
   
    0.617
SSA_0597
Conserved hypothetical protein; GC: 46.41%; Codon Adaptation Index (CAI): 0.792. Helix-turn-helix prediction: AraC. Curator(s): D. Akan, J. Alves.
       0.403
cobB
NAD-dependent deacetylase, putative; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
    0.403
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.