STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dpsDNA Protection System, DNA-binding ferritin-like protein (oxidative damage protectant), putative; GC: 42.25%; Codon Adaptation Index (CAI): 0.828. Curator(s): P. Xu, J. Alves; Protein involved in ferric iron binding and response to stress; Belongs to the Dps family. (171 aa)    
Predicted Functional Partners:
pilD
Type 4 prepilin peptidase, putative; GC: 44.19%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.709. Curator(s): P. Xu, J. Alves.
       0.730
SSA_0646
Conserved hypothetical protein; GC: 38.36%; Codon Adaptation Index (CAI): 0.764. Curator(s): P. Xu.
       0.730
SSA_0647
Conserved hypothetical protein; GC: 42.78%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.818. Curator(s): P. Xu.
       0.730
ctpA
Copper-translocating P-type ATPase, putative; GC: 47.93%; Transporter classification TC:3.A.3.5.1. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.753. LipoP prediction: SpI. Helix-turn-helix prediction: AraC. Curator(s): M. Serrano; Protein involved in metal ion transporter activity.
  
  
 0.639
SSA_0903
NAD(P)H dehydrogenase (quinone), putative; GC: 44.31%; Codon Adaptation Index (CAI): 0.777. Curator(s): L. Ozaki, J. Alves; Protein involved in electron transport.
  
  
 0.592
SSA_0643
Hypothetical protein; GC: 21.14%; Codon Adaptation Index (CAI): 0.8. Curator(s): P. Xu.
       0.566
raiA
30S ribosomal interface protein S30EA, putative; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.535
SSA_0141
Copper chaperone, putative; GC: 43.84%; Codon Adaptation Index (CAI): 0.758. Curator(s): M. Serrano; Protein involved in metal ion binding.
  
  
 0.522
SSA_0065
Low molecular weight phosphotyrosine protein phosphatase, putative; GC: 44.68%; Codon Adaptation Index (CAI): 0.79. Curator(s): J. Alves; Protein involved in protein amino acid dephosphorylation; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.521
glcK
Glucokinase, putative; GC: 46.15%; Codon Adaptation Index (CAI): 0.799; Protein involved in kinase activity and glycolysis.
  
    0.458
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.