Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0646Conserved hypothetical protein; GC: 38.36%; Codon Adaptation Index (CAI): 0.764. Curator(s): P. Xu. (72 aa)    
Predicted Functional Partners:
SSA_0647
Conserved hypothetical protein; GC: 42.78%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.818. Curator(s): P. Xu.
 
     0.874
SSA_0313
Conserved uncharacterized protein; GC: 41.13%; Codon Adaptation Index (CAI): 0.813. Highly conserved, but so far Firmicutes specific. Curator(s): T. Kitten, J. Alves; Belongs to the UPF0356 family.
  
  
 0.756
dps
DNA Protection System, DNA-binding ferritin-like protein (oxidative damage protectant), putative; GC: 42.25%; Codon Adaptation Index (CAI): 0.828. Curator(s): P. Xu, J. Alves; Protein involved in ferric iron binding and response to stress; Belongs to the Dps family.
       0.730
pilD
Type 4 prepilin peptidase, putative; GC: 44.19%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.709. Curator(s): P. Xu, J. Alves.
       0.645
SSA_0900
Tetratricopeptide repeat (TPR) family protein; GC: 46.02%; Codon Adaptation Index (CAI): 0.791. Curator(s): L. Ozaki, J. Alves; Protein involved in binding.
  
     0.621
SSA_0648
Hypothetical protein; GC: 32.02%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.808. SignalP prediction: Yes (prob. 0.999); Curator(s): P. Xu.
       0.612
SSA_1476
Phosphoglycerol transferase, alkaline phosphatase superfamily, putative; GC: 44.72%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.556); Protein involved in sulfuric ester hydrolase activity.
 
     0.602
rpsK
30S ribosomal protein S11, putative; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
    0.506
SSA_1617
Conserved hypothetical protein; GC: 43.52%; Codon Adaptation Index (CAI): 0.79; Protein involved in molecular function unknown; Belongs to the UPF0346 family.
  
   
 0.490
glcK
Glucokinase, putative; GC: 46.15%; Codon Adaptation Index (CAI): 0.799; Protein involved in kinase activity and glycolysis.
  
    0.487
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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