STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0682Conserved uncharacterized protein; GC: 45.2%; Codon Adaptation Index (CAI): 0.786. Curator(s): P. Xu. (277 aa)    
Predicted Functional Partners:
SSA_1978
Dihydroxyacetone kinase family protein (Dak2 domain), putative; GC: 46.31%; Codon Adaptation Index (CAI): 0.802. Curator(s): J. Alves; Protein involved in kinase activity and glycerol metabolism.
 
 0.995
SSA_0683
DNA-binding protein HU, putative; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
     
 0.741
SSA_0183
Conserved hypothetical protein; GC: 45.41%; Codon Adaptation Index (CAI): 0.814. Curator(s): M. Serrano.
  
   
 0.662
uup
ABC-NBD transporters with duplicated ATPase domains, putative; GC: 50.74%; Transporter classification TC:3.A.1.120.1. Codon Adaptation Index (CAI): 0.763. Curator(s): X. Ge, J. Alves; Protein involved in nucleoside-triphosphatase activity.
     
 0.623
recN
DNA repair and genetic recombination, putative; May be involved in recombinational repair of damaged DNA.
       0.619
SSA_1357
Membrane protein, putative; GC: 42.83%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.781.
      
 0.619
xseA
Exodeoxyribonuclease VII large subunit, putative; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.618
xseB
Exodeoxyribonuclease VII small subunit, putative; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.618
ispA
Farnesyl diphosphate synthase, putative; GC: 46.8%; Codon Adaptation Index (CAI): 0.77. Curator(s): P. Xu; Belongs to the FPP/GGPP synthase family.
       0.618
hlyA
rRNA methylase, putative; GC: 49.26%; Codon Adaptation Index (CAI): 0.779. Curator(s): P. Xu; Protein involved in hemolysis of host red blood cells.
       0.618
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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