Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0699Methyltransferase, putative; GC: 31.73%; Codon Adaptation Index (CAI): 0.758. Curator(s): P. Xu; Protein involved in transferase activity. (82 aa)    
Predicted Functional Partners:
SSA_1765
Conserved uncharacterized protein; GC: 30.98%; Codon Adaptation Index (CAI): 0.776; Protein involved in transferase activity.
  
     0.768
SSA_0700
Conserved hypothetical protein; GC: 32.42%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.704. Curator(s): P. Xu; Protein involved in peptidase activity.
       0.671
SSA_1995
Conserved hypothetical protein; GC: 43.81%; Codon Adaptation Index (CAI): 0.779.
  
     0.442
prfC
Peptide chain release factor 3, putative; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.409
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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