STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0723Hypothetical protein; GC: 37.59%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.701. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.792); Curator(s): X. Ge. (46 aa)    
Predicted Functional Partners:
SSA_0722
Conserved hypothetical protein; GC: 42.29%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.777. Curator(s): X. Ge, J. Alves; possible membrane-associated peptidase; Protein involved in proteolysis.
       0.438
SSA_0724
Multidrug ABC transporter ATPase/permease; GC: 42.57%; Transporter classification TC:3.A.1.112.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.784. SignalP prediction: Yes (prob. 0.992); Curator(s): X. Ge, J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
       0.416
SSA_0725
Hypothetical protein; GC: 42.8%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.721. SignalP prediction: Yes (prob. 0.78); Curator(s): X. Ge.
       0.400
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.