Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SSA_0740C4-dicarboxylate anaerobic carrier, possible arginine transporter, putative; GC: 44.71%; Transporter classification TC:9.B.50.1.1. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 1); Curator(s): X. Ge, J. Alves. (503 aa)    
Predicted Functional Partners:
arcT
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase, putative; GC: 48.8%; Codon Adaptation Index (CAI): 0.771. Curator(s): X. Ge, J. Alves; Protein involved in metallopeptidase activity.
 
   
 0.966
arc
Ornithine carbamoyltransferase, catabolic, putative; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
  
 0.893
arcC
Carbamate kinase, putative; GC: 45.68%; Codon Adaptation Index (CAI): 0.795. SignalP prediction: Yes (prob. 0.989); Curator(s): X. Ge; Protein involved in transferase activity; Belongs to the carbamate kinase family.
 
   
 0.820
sagP
Arginine deiminase, putative; GC: 43.25%; Codon Adaptation Index (CAI): 0.794. Curator(s): X. Ge; Protein involved in arginine deiminase activity.
 
  
 0.803
queA
S-adenosylmethio nine:tRNA-ribosyltransferase-isomerase (queuine synthetase), putative; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
      
 0.681
SSA_0736
Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, putative; GC: 42.07%; Codon Adaptation Index (CAI): 0.805. Curator(s): X. Ge; Protein involved in regulation of transcription, DNA-dependent.
 
     0.607
SSA_1487
Conserved uncharacterized protein; GC: 46.47%; Codon Adaptation Index (CAI): 0.773.
  
     0.557
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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