STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0844Conserved hypothetical protein; GC: 37.41%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.766. SignalP prediction: Yes (prob. 0.703); Curator(s): L. Ozaki. (277 aa)    
Predicted Functional Partners:
SSA_0845
ABC-type multidrug transport system, ATPase component, putative; GC: 43.08%; Transporter classification TC:3.A.1.126.1. Codon Adaptation Index (CAI): 0.794. Curator(s): L. Ozaki, J. Alves; Protein involved in nucleoside-triphosphatase activity.
 
    0.964
dnaE
DNA-polymerase III alpha-chain, putative; GC: 46.17%; Codon Adaptation Index (CAI): 0.784. Curator(s): L. Ozaki; Protein involved in 3'-5' exonuclease activity and nucleotidyltransferase activity.
       0.729
pfk
6-phosphofructokinase, putative; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
  
    0.611
ptcC
Phosphotransferase system (PTS), cellobiose-specific IIC component, putative; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
      
 0.489
dnaB
Replication initiation/membrane attachment protein DnaB, putative; GC: 30.63%; Codon Adaptation Index (CAI): 0.786. Curator(s): J. Alves.
 
     0.484
SSA_1203
Conserved hypothetical protein; GC: 42.38%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.768. SignalP prediction: Yes (prob. 0.45).
  
     0.475
rexB
Second subunit of major exonuclease, putative; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' -> 3' nuclease activity; Belongs to the helicase family. AddB/RexB type 2 subfamily.
  
     0.452
cylA
ABC-type multidrug transport system, ATPase component, putative; GC: 47.64%; Transporter classification TC:3.A.1.105.1. Codon Adaptation Index (CAI): 0.758. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
  
    0.402
SSA_1975
ABC-type multidrug transport system, ATPase component, putative; GC: 43.26%; Transporter classification TC:3.A.1.102.1. Codon Adaptation Index (CAI): 0.788. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
  
    0.402
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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