STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0845ABC-type multidrug transport system, ATPase component, putative; GC: 43.08%; Transporter classification TC:3.A.1.126.1. Codon Adaptation Index (CAI): 0.794. Curator(s): L. Ozaki, J. Alves; Protein involved in nucleoside-triphosphatase activity. (235 aa)    
Predicted Functional Partners:
SSA_0844
Conserved hypothetical protein; GC: 37.41%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.766. SignalP prediction: Yes (prob. 0.703); Curator(s): L. Ozaki.
 
    0.964
dnaE
DNA-polymerase III alpha-chain, putative; GC: 46.17%; Codon Adaptation Index (CAI): 0.784. Curator(s): L. Ozaki; Protein involved in 3'-5' exonuclease activity and nucleotidyltransferase activity.
       0.739
pfk
6-phosphofructokinase, putative; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
  
    0.626
SSA_1766
Bacitracin ABC transporter, permease protein, putative; GC: 36.42%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.748; Protein involved in response to antibiotic.
  
 
 0.431
SSA_0724
Multidrug ABC transporter ATPase/permease; GC: 42.57%; Transporter classification TC:3.A.1.112.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.784. SignalP prediction: Yes (prob. 0.992); Curator(s): X. Ge, J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
  
  0.409
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.