STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gtrBGlycosyltransferase (vectorial glycosyl polymerization (VGP) family), putative; GC: 45.52%; Transporter classification TC:9.B.32.1.3. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.773. Curator(s): L. Ozaki; Protein involved in transferase activity. (308 aa)    
Predicted Functional Partners:
SSA_2377
ABC transporter, permease component (possible copper exporter), putative; GC: 33.33%; Transmembrane domains: 14. Codon Adaptation Index (CAI): 0.781. Curator(s): J. Alves.
 
  
 0.784
SSA_0857
Conserved hypothetical protein; GC: 37.09%; Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.756. Curator(s): L. Ozaki, J. Alves; Protein involved in transferase activity.
       0.700
rmlD
DTDP-L-rhamnose synthase, putative; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.685
gtfP
Glucosyltransferase, putative; GC: 44.13%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.796. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998); Curator(s): P. Xu; Protein involved in transferase activity and dextransucrase activity.
      
 0.623
rgpC
ABC-type lipopolysaccharide transport system, permease component, putative; GC: 40.4%; Transporter classification TC:3.A.1.103.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.774. Curator(s): J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
  
 0.586
SSA_1516
Cell-wall biogenesis glycosyltransferase, putative; GC: 40%; Transporter classification TC:9.B.32.1.3. Codon Adaptation Index (CAI): 0.818; Protein involved in transferase activity.
 
     0.542
cysD
O-acetylhomoserine sulfhydrylase, putative; GC: 47.07%; Codon Adaptation Index (CAI): 0.799. Curator(s): L. Ozaki; Protein involved in transferase activity, transferring alkyl or aryl (other than methyl) groups and cellodextrin phosphorylase activity.
       0.540
SSA_1239
Membrane protein, putative; GC: 41.91%; Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.766.
  
  
 0.495
SSA_1512
Membrane protein, putative; GC: 42.48%; Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.76.
 
     0.487
rgpFc
Lipopolysaccharide biosynthesis protein, putative; GC: 41.77%; Codon Adaptation Index (CAI): 0.777; Protein involved in transferase activity.
  
  
 0.486
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.