Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SSA_0860N-acetylmuramidase/lysin, putative; GC: 45.85%; Codon Adaptation Index (CAI): 0.787. Curator(s): L. Ozaki; Protein involved in cell wall catabolism. (1347 aa)    
Predicted Functional Partners:
SSA_0257
N-acetylmuramidase/lysin, putative; GC: 48.35%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.782. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): P. Manque; Protein involved in cell wall catabolism.
 
  
 
0.907
tpi
Triosephosphate isomerase, putative; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.619
SSA_2170
Conserved hypothetical protein; GC: 41.37%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.774. SignalP prediction: Yes (prob. 0.942).
   
   0.564
SSA_1399
Conserved hypothetical protein; GC: 41.09%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.754. SignalP prediction: Yes (prob. 0.992); Curator(s): J. Alves; possibly membrane-associated.
  
     0.452
recJ
Single-stranded DNA-specific exonuclease, 5'-3', putative; GC: 46.24%; Codon Adaptation Index (CAI): 0.791. Helix-turn-helix prediction: AraC; Protein involved in 5'-3' exonuclease activity.
       0.424
SSA_2028
Conserved uncharacterized protein; GC: 36.92%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.781. SignalP prediction: Yes (prob. 0.871); Curator(s): J. Alves.
  
     0.409
SSA_0620
Conserved hypothetical protein; GC: 48.27%; Codon Adaptation Index (CAI): 0.75. Curator(s): P. Xu.
  
     0.405
guaA
GMP synthase [glutamine-hydrolyzing], putative; Catalyzes the synthesis of GMP from XMP.
     
 0.403
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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