Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0863Cof family protein, putative; GC: 44.2%; Codon Adaptation Index (CAI): 0.799. Curator(s): L. Ozaki; Protein involved in hydrolase activity. (269 aa)    
Predicted Functional Partners:
SSA_0864
Conserved hypothetical protein; GC: 45.93%; Codon Adaptation Index (CAI): 0.764. Curator(s): L. Ozaki; Protein involved in signal transduction.
     
 0.864
murM
MurM, putative; GC: 45.93%; Codon Adaptation Index (CAI): 0.786. Helix-turn-helix prediction: AraC. Curator(s): L. Ozaki; Protein involved in peptidoglycan biosynthesis.
     
 0.856
murN
Conserved hypothetical protein; GC: 46.04%; Codon Adaptation Index (CAI): 0.773. Possibly involved in methicillin resistance. Curator(s): L. Ozaki; Protein involved in peptidoglycan biosynthesis.
     
 0.842
SSA_0865
Conserved hypothetical protein; GC: 42.49%; Codon Adaptation Index (CAI): 0.802. Curator(s): L. Ozaki.
       0.733
SSA_0420
Hydrolase, HAD superfamily, putative; GC: 48.98%; Codon Adaptation Index (CAI): 0.766. Curator(s): M. Chaplin; Protein involved in hydrolase activity.
  
     0.691
pacL
Cation-transporting ATPase, E1-E 2 family, putative; GC: 45.43%; Transporter classification TC:3.A.3.2.4. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.805. Curator(s): L. Ozaki.
  
   0.622
rncS
Ribonuclease III, putative; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.407
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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