STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_08913-carboxymuconate cyclase, putative; GC: 46.59%; Codon Adaptation Index (CAI): 0.763. Curator(s): L. Ozaki. (336 aa)    
Predicted Functional Partners:
gdh
Glucose-6-phosphate 1-dehydrogenase, putative; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
 
  
 0.962
gnd
6-phosphogluconate dehydrogenase, putative; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
 
  
 0.962
SSA_0889
Isoleucyl-tRNA synthetase, putative; GC: 32.81%; Codon Adaptation Index (CAI): 0.815. Curator(s): L. Ozaki.
       0.753
cutC
Copper homeostasis protein CutC, putative; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
    0.667
aldB
Alpha-acetolactate decarboxylase, putative; GC: 45.83%; Codon Adaptation Index (CAI): 0.808. Curator(s): L. Ozaki; Protein involved in acetolactate decarboxylase activity; Belongs to the alpha-acetolactate decarboxylase family.
 
     0.512
fruA
PTS system, fructose specific II ABC components, putative; GC: 43.96%; Transporter classification TC:4.A.2.1.3. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.786.
      
 0.502
SSA_0892
ATP-binding cassette lipoprotein, putative; GC: 41.76%; Codon Adaptation Index (CAI): 0.77. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.879); Curator(s): L. Ozaki; Protein involved in ATP binding.
       0.497
SSA_1055
Conserved uncharacterized protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.
   
    0.466
SSA_0899
Conserved permease, putative; GC: 41.9%; Transporter classification TC:9.B.22.1.1. Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.798. Curator(s): L. Ozaki, J. Alves.
       0.450
SSA_0900
Tetratricopeptide repeat (TPR) family protein; GC: 46.02%; Codon Adaptation Index (CAI): 0.791. Curator(s): L. Ozaki, J. Alves; Protein involved in binding.
       0.450
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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