Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
SSA_0895ATP-binding cassette transporter-like protein, putative; GC: 45.32%; Transporter classification TC:3.A.1.122.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.778. SignalP prediction: Yes (prob. 0.46); Curator(s): L. Ozaki. (405 aa)    
Predicted Functional Partners:
SSA_0894
ATP-binding cassette protein, putative; GC: 47.11%; Transporter classification TC:3.A.1.122.1. Codon Adaptation Index (CAI): 0.767. Curator(s): L. Ozaki; Protein involved in nucleoside-triphosphatase activity.
 
 0.998
salX
ABC-type antimicrobial peptide transporter, ATPase component, putative; GC: 47.21%; Transporter classification TC:3.A.1.122.1. Codon Adaptation Index (CAI): 0.794. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
 
 0.993
SSA_0893
ATP-binding cassette transporter-like protein, putative; GC: 44.55%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.805. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.943); Curator(s): L. Ozaki.
 
 
 0.982
SSA_0606
ABC-type antimicrobial peptide transport system, ATPase component, putative; GC: 49.33%; Transporter classification TC:3.A.1.122.1. Codon Adaptation Index (CAI): 0.735. Curator(s): D. Akan, J. Alves; Protein involved in nucleoside-triphosphatase activity.
 
 0.962
acrA
Membrane-fusion protein / periplasmic component of efflux system, putative; GC: 44.76%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.8. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.951
SSA_0925
ABC-type antimicrobial peptide transport system, ATPase component, putative; GC: 48.05%; Transporter classification TC:3.A.1.114.1. Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten; Protein involved in nucleoside-triphosphatase activity.
 
 0.947
SSA_1660
ABC-type antimicrobial peptide transport system, ATPase component, putative; GC: 48.95%; Transporter classification TC:3.A.1.123.4. Codon Adaptation Index (CAI): 0.752. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
   0.942
SSA_1681
ABC-type bacitracin resistance protein A, ATPase component, putative; GC: 48.46%; Transporter classification TC:3.A.1.123.4. Codon Adaptation Index (CAI): 0.754. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
   0.939
SSA_1589
ABC-type antimicrobial peptide transport system, ATPase component, putative; GC: 47.15%; Transporter classification TC:3.A.1.125.1. Codon Adaptation Index (CAI): 0.766. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
   0.922
SSA_2249
ABC-type antimicrobial peptide transporter, ATPase component, putative; GC: 32.21%; Transporter classification TC:3.A.1.122.1. Codon Adaptation Index (CAI): 0.731. Helix-turn-helix prediction: AraC. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
   0.907
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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