Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SSA_0899Conserved permease, putative; GC: 41.9%; Transporter classification TC:9.B.22.1.1. Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.798. Curator(s): L. Ozaki, J. Alves. (392 aa)    
Predicted Functional Partners:
SSA_0900
Tetratricopeptide repeat (TPR) family protein; GC: 46.02%; Codon Adaptation Index (CAI): 0.791. Curator(s): L. Ozaki, J. Alves; Protein involved in binding.
       0.855
aldB
Alpha-acetolactate decarboxylase, putative; GC: 45.83%; Codon Adaptation Index (CAI): 0.808. Curator(s): L. Ozaki; Protein involved in acetolactate decarboxylase activity; Belongs to the alpha-acetolactate decarboxylase family.
       0.697
SSA_0898
Hypothetical protein; GC: 43.75%; Codon Adaptation Index (CAI): 0.778. Curator(s): L. Ozaki.
       0.548
SSA_0940
NOL1/NOP2/sun family protein, putative; GC: 46.36%; Codon Adaptation Index (CAI): 0.798. Curator(s): T. Kitten; Protein involved in transferase activity.
     
 0.529
SSA_1904
ABC-type multidrug transport system, permease component, putative; GC: 44.32%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.767. Curator(s): J. Alves.
     
 0.516
SSA_1837
Conserved hypothetical protein; GC: 42.5%; Codon Adaptation Index (CAI): 0.795. Curator(s): J. Alves; Protein involved in molecular function unknown.
     
 0.505
SSA_0889
Isoleucyl-tRNA synthetase, putative; GC: 32.81%; Codon Adaptation Index (CAI): 0.815. Curator(s): L. Ozaki.
       0.450
SSA_0891
3-carboxymuconate cyclase, putative; GC: 46.59%; Codon Adaptation Index (CAI): 0.763. Curator(s): L. Ozaki.
       0.450
mutX
Mutator protein, putative; GC: 46.24%; Codon Adaptation Index (CAI): 0.785; Protein involved in hydrolase activity; Belongs to the Nudix hydrolase family.
       0.450
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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