STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
crpBCshA-like fibrillar surface protein B; GC: 46.38%; Codon Adaptation Index (CAI): 0.797. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): T. Kitten, J. Alves; Protein involved in pathogenesis. (1966 aa)    
Predicted Functional Partners:
crpA
CshA-like fibrillar surface protein A; GC: 46.68%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.801. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): L. Ozaki, J. Alves; Protein involved in calcium ion binding and pathogenesis.
 
  
 
0.943
crpC
CshA-like fibrillar surface protein C; GC: 46.28%; Codon Adaptation Index (CAI): 0.794. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): T. Kitten, J. Alves; Protein involved in pathogenesis.
 
  
 
0.938
SSA_0700
Conserved hypothetical protein; GC: 32.42%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.704. Curator(s): P. Xu; Protein involved in peptidase activity.
  
     0.774
SSA_1312
RADC-like protein, putative; GC: 35.81%; Codon Adaptation Index (CAI): 0.764.
  
     0.772
UbiA
4-hydroxybenzoate octaprenyltransferase, putative; GC: 44.44%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.789.
  
     0.770
SSA_1274
Hypothetical protein; GC: 39.32%; Codon Adaptation Index (CAI): 0.804. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1).
  
 
 0.770
SSA_1019
Collagen-binding surface protein, putative; GC: 42.42%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.8. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1).
  
     0.768
SSA_1322
Glycosyl transferase, putative; GC: 46.26%; Codon Adaptation Index (CAI): 0.769; Protein involved in transferase activity, transferring hexosyl groups and transferase activity.
  
     0.762
sspD
Streptococcal surface protein D; GC: 45.02%; Codon Adaptation Index (CAI): 0.786. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): T. Kitten, J. Alves.
  
     0.760
SSA_1011
Conserved hypothetical protein; GC: 46.7%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.747. SignalP prediction: Yes (prob. 0.457); Protein involved in phosphatidate cytidylyltransferase activity.
  
     0.757
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.