STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0925ABC-type antimicrobial peptide transport system, ATPase component, putative; GC: 48.05%; Transporter classification TC:3.A.1.114.1. Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten; Protein involved in nucleoside-triphosphatase activity. (221 aa)    
Predicted Functional Partners:
SSA_0924
ABC-type antimicrobial peptide transport system, permease component, putative; GC: 44.41%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.487); Curator(s): T. Kitten.
 
 0.998
SSA_0895
ATP-binding cassette transporter-like protein, putative; GC: 45.32%; Transporter classification TC:3.A.1.122.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.778. SignalP prediction: Yes (prob. 0.46); Curator(s): L. Ozaki.
 
 0.947
SSA_1530
ABC-type antimicrobial peptide transport system, permease component, putative; GC: 44.6%; Transporter classification TC:3.A.1.122.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.773. SignalP prediction: Yes (prob. 0.994); Curator(s): J. Alves.
 
 0.940
SSA_1588
Conserved ABC-type antimicrobial permease-like protein, putative; GC: 45.85%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.766. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.976); Curator(s): J. Alves.
 
 
 0.680
SSA_0503
Peptide ABC transporter, ATP-binding protein, putative; GC: 49.37%; Transporter classification TC:3.A.1.5.9. Codon Adaptation Index (CAI): 0.763. Curator(s): D. Akan; Protein involved in nucleoside-triphosphatase activity.
 
   
0.668
SSA_0926
Histone acetyltransferase HPA2, putative; GC: 45.08%; Codon Adaptation Index (CAI): 0.758. Curator(s): T. Kitten; Protein involved in N-acetyltransferase activity and transferase activity.
  
    0.613
stpA
ABC-type cobalt transport system, ATPase component, putative; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
    
0.599
SSA_0923
Transcriptional regulator, TetR/AcrR family, putative; GC: 43.51%; Codon Adaptation Index (CAI): 0.788. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten, J. Alves; Protein involved in regulation of transcription and regulation of transcription, DNA-dependent.
   
   0.523
SSA_0893
ATP-binding cassette transporter-like protein, putative; GC: 44.55%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.805. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.943); Curator(s): L. Ozaki.
  
 
 0.522
acrA
Membrane-fusion protein / periplasmic component of efflux system, putative; GC: 44.76%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.8. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.522
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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