STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0927Transcriptional regulator, TetR/AcrR family, putative; GC: 47.39%; Codon Adaptation Index (CAI): 0.768. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten, J. Alves; Protein involved in regulation of transcription and regulation of transcription, DNA-dependent. (203 aa)    
Predicted Functional Partners:
SSA_0929
ABC-type multidrug transporter, ATPase and permease components, putative; GC: 46.28%; Transporter classification TC:3.A.1.21.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.78. Curator(s): T. Kitten, J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
     0.915
SSA_0928
ABC-type multidrug transporter, ATPase and permease components, putative; GC: 45.16%; Transporter classification TC:3.A.1.21.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.794. SignalP prediction: Yes (prob. 0.563); Curator(s): T. Kitten, J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
     0.913
SSA_0590
Conserved hypothetical protein; GC: 44.44%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.733. Curator(s): D. Akan, J. Alves.
 
     0.564
SSA_0931
Hypothetical protein; GC: 36.82%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.77. SignalP prediction: Yes (prob. 0.515); Curator(s): T. Kitten.
       0.494
SSA_0926
Histone acetyltransferase HPA2, putative; GC: 45.08%; Codon Adaptation Index (CAI): 0.758. Curator(s): T. Kitten; Protein involved in N-acetyltransferase activity and transferase activity.
       0.463
SSA_0925
ABC-type antimicrobial peptide transport system, ATPase component, putative; GC: 48.05%; Transporter classification TC:3.A.1.114.1. Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten; Protein involved in nucleoside-triphosphatase activity.
   
   0.405
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.