STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mocAOxidoreductase, putative; GC: 46.88%; Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.815); Curator(s): T. Kitten; Protein involved in oxidoreductase activity. (336 aa)    
Predicted Functional Partners:
deaD
DEAD RNA helicase, putative; GC: 44.96%; Codon Adaptation Index (CAI): 0.787. Curator(s): T. Kitten; Protein involved in hydrolase activity.
       0.855
udK
Uridine kinase, putative; GC: 45.06%; Codon Adaptation Index (CAI): 0.798. Curator(s): T. Kitten; Protein involved in transferase activity.
    
  0.767
SSA_2363
Phosphoglycolate phosphatase, putative; GC: 38.73%; Codon Adaptation Index (CAI): 0.756. Helix-turn-helix prediction: AraC; Protein involved in hydrolase activity.
      0.621
lysS
Lysyl-tRNA synthetase, putative; GC: 44.94%; Codon Adaptation Index (CAI): 0.803; Protein involved in lysyl-tRNA aminoacylation; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.581
glmU
N-acetylglucosamine-1-phosphate uridyltransferase, putative; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the transferase hexapeptide repea [...]
     
 0.483
FabG
3-Ketoacyl-ACP reductase, putative; GC: 50.21%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.786. LipoP prediction: SpI. Helix-turn-helix prediction: AraC; Protein involved in oxidoreductase activity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.458
apt
Adenine phosphoribosyltransferase, putative; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
      
 0.455
pfs
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
       0.450
SSA_1640
Conserved hypothetical protein; GC: 46.1%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.791.
       0.450
SSA_1641
MutT/nudix family protein, putative; GC: 45.47%; Codon Adaptation Index (CAI): 0.776.
       0.450
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.