STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0967Conserved hypothetical protein; GC: 43.8%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.746. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.7); Curator(s): T. Kitten. (222 aa)    
Predicted Functional Partners:
ugpQ
Membrane-anchored glycerophosphoryl diester phosphodiesterase, putative; GC: 44.84%; Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.752. SignalP prediction: Yes (prob. 0.982); Curator(s): T. Kitten, J. Alves; Protein involved in glycerophosphodiester phosphodiesterase activity.
  
     0.608
udK
Uridine kinase, putative; GC: 45.06%; Codon Adaptation Index (CAI): 0.798. Curator(s): T. Kitten; Protein involved in transferase activity.
       0.563
SSA_0968
Conserved hypothetical protein; GC: 36.36%; Codon Adaptation Index (CAI): 0.791. Curator(s): T. Kitten.
       0.469
deaD
DEAD RNA helicase, putative; GC: 44.96%; Codon Adaptation Index (CAI): 0.787. Curator(s): T. Kitten; Protein involved in hydrolase activity.
       0.455
mocA
Oxidoreductase, putative; GC: 46.88%; Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.815); Curator(s): T. Kitten; Protein involved in oxidoreductase activity.
       0.417
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.