STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0984SlyA-like protein, putative; GC: 41.32%; Codon Adaptation Index (CAI): 0.825. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten; Protein involved in regulation of transcription, DNA-dependent. (145 aa)    
Predicted Functional Partners:
proW
ABC-type choline transporter, membrane-spanning permease, putative; GC: 43.98%; Transporter classification TC:3.A.1.12.4. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.771. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten.
  
  
 0.901
SSA_0985
Conserved hypothetical protein; GC: 43.79%; Codon Adaptation Index (CAI): 0.776. Curator(s): T. Kitten.
       0.853
SSA_0986
Choline transporter, putative; GC: 46.5%; Transporter classification TC:3.A.1.12.3. Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten; Protein involved in nucleoside-triphosphatase activity.
  
    0.845
SSA_0988
TfoX N-terminal domain family protein, putative; GC: 40.25%; Codon Adaptation Index (CAI): 0.821. Curator(s): T. Kitten.
       0.472
SSA_0983
Conserved uncharacterized protein; GC: 46.92%; Codon Adaptation Index (CAI): 0.835. Curator(s): T. Kitten; Belongs to the SUA5 family.
       0.459
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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