STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_0986Choline transporter, putative; GC: 46.5%; Transporter classification TC:3.A.1.12.3. Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten; Protein involved in nucleoside-triphosphatase activity. (242 aa)    
Predicted Functional Partners:
proW
ABC-type choline transporter, membrane-spanning permease, putative; GC: 43.98%; Transporter classification TC:3.A.1.12.4. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.771. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten.
 
 0.999
SSA_0442
ABC-type multidrug transport system, ATPase component, putative; GC: 40.62%; Transporter classification TC:3.A.1.211.3. Codon Adaptation Index (CAI): 0.727. Curator(s): M. Chaplin, J. Alves; Protein involved in nucleoside-triphosphatase activity.
 
    
0.900
SSA_1989
ABC-type transport system (uncharacterized), ATPase component, putative; GC: 44.51%; Transporter classification TC:3.A.1.23.2. Codon Adaptation Index (CAI): 0.785. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
 
     
0.889
SSA_0984
SlyA-like protein, putative; GC: 41.32%; Codon Adaptation Index (CAI): 0.825. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten; Protein involved in regulation of transcription, DNA-dependent.
  
    0.845
SSA_0985
Conserved hypothetical protein; GC: 43.79%; Codon Adaptation Index (CAI): 0.776. Curator(s): T. Kitten.
       0.838
SSA_0462
ATP-binding cassette, subfamily B, bacterial; GC: 47.33%; Transporter classification TC:3.A.1.106.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.777. SignalP prediction: Yes (prob. 0.48); Curator(s): M. Chaplin, J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
     
0.835
SSA_0928
ABC-type multidrug transporter, ATPase and permease components, putative; GC: 45.16%; Transporter classification TC:3.A.1.21.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.794. SignalP prediction: Yes (prob. 0.563); Curator(s): T. Kitten, J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
     
0.626
SSA_1530
ABC-type antimicrobial peptide transport system, permease component, putative; GC: 44.6%; Transporter classification TC:3.A.1.122.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.773. SignalP prediction: Yes (prob. 0.994); Curator(s): J. Alves.
 
      0.522
SSA_1279
Oxidoreductase, putative; GC: 47.14%; Codon Adaptation Index (CAI): 0.756.
 
    0.520
opuAb
ABC transporter, glycine-betaine/proline permease protein, putative; GC: 49.22%; Transporter classification TC:3.A.1.12.5. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.772. Curator(s): T. Kitten.
  
  
 0.518
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.