STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
proWABC-type choline transporter, membrane-spanning permease, putative; GC: 43.98%; Transporter classification TC:3.A.1.12.4. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.771. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten. (506 aa)    
Predicted Functional Partners:
SSA_0986
Choline transporter, putative; GC: 46.5%; Transporter classification TC:3.A.1.12.3. Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten; Protein involved in nucleoside-triphosphatase activity.
 
 0.999
opuAb
ABC transporter, glycine-betaine/proline permease protein, putative; GC: 49.22%; Transporter classification TC:3.A.1.12.5. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.772. Curator(s): T. Kitten.
 
 
0.916
SSA_0984
SlyA-like protein, putative; GC: 41.32%; Codon Adaptation Index (CAI): 0.825. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten; Protein involved in regulation of transcription, DNA-dependent.
  
  
 0.901
SSA_0985
Conserved hypothetical protein; GC: 43.79%; Codon Adaptation Index (CAI): 0.776. Curator(s): T. Kitten.
       0.850
opuAa
Glycine-betaine ABC transporter, ATPase component, putative; GC: 48.53%; Transporter classification TC:3.A.1.12.5. Codon Adaptation Index (CAI): 0.781. Curator(s): T. Kitten; Protein involved in nucleoside-triphosphatase activity.
 
  
 0.821
gid
Gid-like protein, putative; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
      
 0.671
potA
ABC transporter ATP-binding protein-spermidine/putrescine transport, putative; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
 0.637
SSA_1279
Oxidoreductase, putative; GC: 47.14%; Codon Adaptation Index (CAI): 0.756.
 
    0.620
pkn
Serine/threonine protein kinase, putative; GC: 45.95%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.786; Protein involved in transferase activity.
     
 0.564
SSA_1359
Arginine/histidine ABC transporter, permease component, putative; GC: 45.55%; Transporter classification TC:3.A.1.3.12. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.786. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): J. Alves.
     
 0.545
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.