Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SSA_1003ABC transporter substrate-binding protein-multiple sugars, putative; GC: 42.54%; Transporter classification TC:3.A.1.1.2. Codon Adaptation Index (CAI): 0.784. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1); Protein involved in transport. (419 aa)    
Predicted Functional Partners:
msmG
Sugar ABC transporter, permease protein, putative; GC: 37.65%; Transporter classification TC:3.A.1.1.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.788. SignalP prediction: Yes (prob. 0.929).
 
 0.999
msmF
ABC transporter membrane-spanning permease-multiple sugars, putative; GC: 41.98%; Transporter classification TC:3.A.1.1.2. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.743. SignalP prediction: Yes (prob. 0.537).
 
 0.998
SSA_1007
ABC transporter ATP-binding protein-multiple sugar transport, putative; GC: 46%; Transporter classification TC:3.A.1.1.2. Codon Adaptation Index (CAI): 0.775. Helix-turn-helix prediction: AraC; Protein involved in nucleoside-triphosphatase activity; Belongs to the ABC transporter superfamily.
 
 0.985
gtfA
Dextransucrase, putative; GC: 41.84%; Codon Adaptation Index (CAI): 0.798; Protein involved in transferase activity, transferring glycosyl groups, dextransucrase activity and carbohydrate metabolism.
 
  
 0.975
SSA_0072
ABC sugar transporter, MsmK-like protein, putative; GC: 42.5%; Transporter classification TC:3.A.1.1.2. Codon Adaptation Index (CAI): 0.776. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity; Belongs to the ABC transporter superfamily.
 
 0.956
SSA_0148
Sugar ABC transporter, ATP-binding protein, putative; GC: 47.21%; Transporter classification TC:3.A.1.1.2. Codon Adaptation Index (CAI): 0.77. Curator(s): M. Serrano; Protein involved in nucleoside-triphosphatase activity; Belongs to the ABC transporter superfamily.
 
 0.956
SSA_2040
ABC transporter ATP-binding protein-multiple sugar transport, putative; GC: 40.94%; Transporter classification TC:3.A.1.1.2. Codon Adaptation Index (CAI): 0.794; Protein involved in nucleoside-triphosphatase activity; Belongs to the ABC transporter superfamily.
 
 0.956
SSA_0076
ABC sugar transporter, permease protein, putative; GC: 36.81%; Transporter classification TC:3.A.1.1.17. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.735. Curator(s): J. Alves.
 
 
 0.896
SSA_1002
Alpha-galactosidase, putative; GC: 42.39%; Codon Adaptation Index (CAI): 0.767; Protein involved in carbohydrate metabolism.
 
  
 0.895
SSA_0075
ABC sugar transporter, permease protein, putative; GC: 37.97%; Transporter classification TC:3.A.1.1.19. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.772. SignalP prediction: Yes (prob. 0.555); Curator(s): J. Alves.
 
 
 0.857
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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