STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1027Conserved hypothetical protein; GC: 42.43%; Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.77. Possibly membrane-related. Curator(s): J. Alves. (545 aa)    
Predicted Functional Partners:
SSA_1026
ABC-type multidrug transporter, ATPase component, putative; GC: 43.95%; Transporter classification TC:3.A.1.105.1. Codon Adaptation Index (CAI): 0.791. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
 
     0.940
crpC
CshA-like fibrillar surface protein C; GC: 46.28%; Codon Adaptation Index (CAI): 0.794. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): T. Kitten, J. Alves; Protein involved in pathogenesis.
  
     0.645
crpA
CshA-like fibrillar surface protein A; GC: 46.68%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.801. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): L. Ozaki, J. Alves; Protein involved in calcium ion binding and pathogenesis.
  
     0.639
crpB
CshA-like fibrillar surface protein B; GC: 46.38%; Codon Adaptation Index (CAI): 0.797. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): T. Kitten, J. Alves; Protein involved in pathogenesis.
  
     0.639
SSA_0696
Conserved hypothetical protein; GC: 43.09%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.759. Curator(s): P. Xu.
  
     0.570
SSA_1705
Conserved hypothetical protein; GC: 40.79%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.791. SignalP prediction: Yes (prob. 0.473).
  
     0.564
SSA_1312
RADC-like protein, putative; GC: 35.81%; Codon Adaptation Index (CAI): 0.764.
  
     0.556
amy
Alpha-amylase, putative; GC: 44.04%; Codon Adaptation Index (CAI): 0.77; Protein involved in carbohydrate metabolism.
       0.546
SSA_0695
Conserved hypothetical protein; GC: 41.63%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.784. Curator(s): P. Xu.
  
     0.497
UbiA
4-hydroxybenzoate octaprenyltransferase, putative; GC: 44.44%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.789.
  
     0.451
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.