STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1041Sugar ABC transporter, permease protein, putative; GC: 45.25%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.767. SignalP prediction: Yes (prob. 0.992); Belongs to the binding-protein-dependent transport system permease family. (318 aa)    
Predicted Functional Partners:
SSA_1039
Sugar ABC transporter, ATP-binding protein, putative; GC: 43.62%; Transporter classification TC:3.A.1.2.4. Codon Adaptation Index (CAI): 0.813; Protein involved in nucleoside-triphosphatase activity.
 
 0.999
SSA_1040
Sugar ABC transporter, permease protein, putative; GC: 42.19%; Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.996); Belongs to the binding-protein-dependent transport system permease family.
 
0.999
SSA_1038
Lipoprotein, putative; GC: 41.38%; Codon Adaptation Index (CAI): 0.814. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.999); Protein involved in lipid binding.
 
 
 0.995
pdp
Pyrimidine nucleoside phosphorylase, putative; GC: 44.37%; Codon Adaptation Index (CAI): 0.805; Protein involved in transferase activity, transferring glycosyl groups.
     
 0.740
deoC
Deoxyribose-phosphate aldolase, putative; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
  
  
 0.739
cdd
Cytidine deaminase, putative; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.725
SSA_1034
Conserved uncharacterized protein; GC: 43.2%; Codon Adaptation Index (CAI): 0.782; Protein involved in transferase activity.
       0.627
coaA
Pantothenate kinase, putative; GC: 41.04%; Codon Adaptation Index (CAI): 0.773. Helix-turn-helix prediction: AraC.
       0.582
rpsT
30S ribosomal protein subunit S20, putative; Binds directly to 16S ribosomal RNA.
       0.558
nox
H2O-forming NADH dehydrogenase, putative; GC: 40.38%; Codon Adaptation Index (CAI): 0.812. Curator(s): J. Alves.
       0.450
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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