STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1102Conserved hypothetical protein; GC: 35.38%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.815. Curator(s): J. Alves. (113 aa)    
Predicted Functional Partners:
SSA_1103
Hypothetical protein; GC: 33.33%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.781. SignalP prediction: Yes (prob. 0.502).
       0.518
SSA_1833
Conserved hypothetical protein; GC: 38.36%; Codon Adaptation Index (CAI): 0.729.
  
     0.470
SSA_1876
Conserved hypothetical protein; GC: 41.62%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.746.
  
     0.429
SSA_1100
Hemolysin exporter, ATPase component, putative; GC: 41.01%; Transporter classification TC:3.A.1.109.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.765. Curator(s): J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
       0.416
SSA_1101
Multidrug resistance efflux pump/hemolysin secretion transmembrane protein, putative; GC: 36.81%; Transporter classification TC:8.A.1.3.1. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.735. Curator(s): J. Alves.
       0.416
SSA_1525
Lyzozyme M1 (1,4-beta-N-acetylmuramidase), putative; GC: 39.98%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.785. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998); Protein involved in cell wall catabolism.
  
     0.401
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.