STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
brnQBranched-chain amino acid transport system II carrier protein, putative; Component of the transport system for branched-chain amino acids. (442 aa)    
Predicted Functional Partners:
SSA_1098
Formate-nitrate transporter, putative; GC: 42.48%; Transporter classification TC:2.A.44.3.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.772.
      
 0.540
shetA
Exfoliative toxin, putative; GC: 45.21%; Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.731.
      
 0.519
SSA_1112
Cell wall surface anchor family protein, putative; GC: 41.25%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.793. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1).
       0.440
dctA
Serine/threonine:Na+ symporter, putative; GC: 50%; Transporter classification TC:2.A.23.4.1. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.744. SignalP prediction: Yes (prob. 0.996); Curator(s): T. Kitten; Protein involved in sodium:dicarboxylate symporter activity; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
   
 0.407
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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