STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1124Oxidoreductase, putative; GC: 43.61%; Codon Adaptation Index (CAI): 0.801. (414 aa)    
Predicted Functional Partners:
apbE
Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.896
SSA_1125
NADPH-dependent FMN reductase, putative; GC: 40.92%; Codon Adaptation Index (CAI): 0.795. Curator(s): J. Alves.
 
   
0.857
SSA_1386
NADPH-dependent FMN reductase, putative; GC: 47.18%; Codon Adaptation Index (CAI): 0.774. Curator(s): J. Alves.
 
    0.794
nox
H2O-forming NADH dehydrogenase, putative; GC: 40.38%; Codon Adaptation Index (CAI): 0.812. Curator(s): J. Alves.
       0.521
SSA_0460
Multiple antibiotic resistance operon transcription repressor (MarR), putative; GC: 42.48%; Codon Adaptation Index (CAI): 0.791. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin, J. Alves; Protein involved in regulation of transcription, DNA-dependent.
   
    0.484
SSA_1477
Truncated transposase, putative; GC: 38.94%; Codon Adaptation Index (CAI): 0.768; Protein involved in regulation of transcription.
  
     0.474
SSA_1098
Formate-nitrate transporter, putative; GC: 42.48%; Transporter classification TC:2.A.44.3.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.772.
       0.450
SSA_1562
Conserved hypothetical protein; GC: 41.39%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.758. SignalP prediction: Yes (prob. 0.906).
       0.450
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.