STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dfpDfp-like protein, putative; GC: 44.57%. Similar to N-terminal region of Dfp protein. Codon Adaptation Index (CAI): 0.807. (183 aa)    
Predicted Functional Partners:
SSA_1201
Conserved hypothetical protein; GC: 43.42%; Codon Adaptation Index (CAI): 0.768.
 
 0.999
coaA
Pantothenate kinase, putative; GC: 41.04%; Codon Adaptation Index (CAI): 0.773. Helix-turn-helix prediction: AraC.
   
 
 0.945
kdtB
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
 
 0.942
SSA_1203
Conserved hypothetical protein; GC: 42.38%; Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.768. SignalP prediction: Yes (prob. 0.45).
 
     0.879
fhs
Formate--tetrahydrofolate ligase, putative; GC: 45.3%; Codon Adaptation Index (CAI): 0.806; Protein involved in ligase activity and folic acid and derivative biosynthesis; Belongs to the formate--tetrahydrofolate ligase family.
     
 0.772
priA
Primosomal protein N', putative; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
 
    0.682
pgm
Phosphoglucomutase; GC: 44.5%; Codon Adaptation Index (CAI): 0.821. Helix-turn-helix prediction: AraC.
       0.669
SSA_1199
Phosphinothricin acetyltransferase, putative; GC: 42.75%; Codon Adaptation Index (CAI): 0.742; Protein involved in transferase activity.
       0.652
SSA_1198
ATPase (PilT family), putative; GC: 41.83%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.809. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.774).
 
     0.629
alkD
DNA alkylation repair enzyme, putative; GC: 42.09%; Codon Adaptation Index (CAI): 0.754.
       0.558
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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