STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1269Conserved hypothetical protein; GC: 45.41%; Codon Adaptation Index (CAI): 0.792; Protein involved in molecular function unknown. (460 aa)    
Predicted Functional Partners:
SSA_1956
ABC-type Fe-S cluster assembly transporter, ATPase component, putative; GC: 45.4%; Codon Adaptation Index (CAI): 0.818. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
 
 0.978
SSA_1954
Aminotransferase, class-V, putative; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.904
nifU
NifU family protein, putative; GC: 48.63%; Codon Adaptation Index (CAI): 0.757.
  
  
 0.709
flaV
Flavodoxin; GC: 45.35%; Codon Adaptation Index (CAI): 0.778; Protein involved in oxidoreductase activity.
     
 0.704
SSA_1955
ABC-type Fe-S cluster assembly transporter, permease component, putative; GC: 46.56%; Codon Adaptation Index (CAI): 0.808. Curator(s): J. Alves; Protein involved in molecular function unknown and signal transduction.
 
  
0.702
aroH
Chorismate mutase/prephenate dehydratase, putative; GC: 39.02%; Codon Adaptation Index (CAI): 0.767; Protein involved in aromatic amino acid family biosynthesis.
     
 0.626
crcB2
crcB-like protein 2, putative; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
     
 0.625
crcB1
crcB-like protein 1, putative; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
     
 0.612
SSA_2222
Tyrosine-protein kinase Wze, putative; GC: 45.06%; Transporter classification TC:8.A.3.2.2. Codon Adaptation Index (CAI): 0.757. Curator(s): J. Alves; Protein involved in capsule polysaccharide biosynthesis.
     
 0.449
SSA_2223
Capsular polysaccharide biosynthesis protein Wzd (chain length regulator), putative; GC: 46.12%; Transporter classification TC:8.A.3.2.1. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.787. Curator(s): J. Alves.
      
 0.407
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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