STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trkA2Trk transporter NAD+ binding protein-K+ transport, putative; GC: 46.7%; Transporter classification TC:2.A.38.4.4. Codon Adaptation Index (CAI): 0.784; Protein involved in cation transporter activity and potassium ion transport. (221 aa)    
Predicted Functional Partners:
trkH2
Trk transporter membrane-spanning protein-K+ transport, putative; GC: 45.33%; Transporter classification TC:2.A.38.4.3. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.771. SignalP prediction: Yes (prob. 1); Protein involved in cation transporter activity.
 
 
 0.997
SSA_1308
Hypothetical protein; GC: 45.83%; Codon Adaptation Index (CAI): 0.747.
       0.806
trkH
Potassium uptake protein, Trk family, putative; GC: 47.29%; Transporter classification TC:2.A.38.1.1. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.732; Protein involved in cation transporter activity.
  
 
 0.716
sunL
RRNA methyltransferase RsmB, putative; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.615
fer
Ferredoxin, putative; GC: 46.57%; Codon Adaptation Index (CAI): 0.733; Protein involved in electron transport and transport.
      
 0.510
pstC
ABC transporter membrane-spanning permease-phosphate transport, putative; GC: 46.33%; Transporter classification TC:3.A.1.7.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.777. Curator(s): T. Kitten.
     
 0.480
SSA_1305
Conserved hypothetical protein; GC: 41.8%; Codon Adaptation Index (CAI): 0.777; Protein involved in N-acetyltransferase activity and transferase activity.
  
    0.478
SSA_0387
Transcriptional regulator, GntR family, putative; GC: 48.29%; Codon Adaptation Index (CAI): 0.735. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten; Protein involved in cation transporter activity.
  
  
 0.477
gidB
Methyltransferase gidB, putative; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
   
   0.475
SSA_0474
Uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase, putative; GC: 50.07%; Codon Adaptation Index (CAI): 0.77. Curator(s): M. Chaplin; Protein involved in transferase activity.
  
    0.453
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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