STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ferFerredoxin, putative; GC: 46.57%; Codon Adaptation Index (CAI): 0.733; Protein involved in electron transport and transport. (67 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase, putative; GC: 44.69%; Codon Adaptation Index (CAI): 0.79; Protein involved in nucleotide kinase activity.
  
  
 0.831
infC
Translation initiation factor IF-3, putative; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
     
 0.746
SSA_1502
Conserved uncharacterized protein (contains LysM, Lysin motif); GC: 46.35%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.766. Curator(s): J. Alves.
       0.745
rpmI
50S ribosomal protein L35, putative; GC: 44.78%; Codon Adaptation Index (CAI): 0.823. SignalP prediction: Yes (prob. 0.488); Belongs to the bacterial ribosomal protein bL35 family.
  
    0.618
rplT
50S ribosomal protein L20, putative; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.583
SSA_0506
Iron-sulfur cluster-binding protein, putative; GC: 48.25%; Codon Adaptation Index (CAI): 0.753. Curator(s): D. Akan; Protein involved in 4 iron, 4 sulfur cluster binding.
     
 0.581
trkA2
Trk transporter NAD+ binding protein-K+ transport, putative; GC: 46.7%; Transporter classification TC:2.A.38.4.4. Codon Adaptation Index (CAI): 0.784; Protein involved in cation transporter activity and potassium ion transport.
      
 0.510
trkA
Potassium uptake protein, Trk family, putative; GC: 45.19%; Transporter classification TC:8.A.5.2.1. Codon Adaptation Index (CAI): 0.773. Helix-turn-helix prediction: AraC; Protein involved in cation transporter activity.
      
 0.510
basA
Glutathione peroxidase, putative; GC: 43.46%; Codon Adaptation Index (CAI): 0.8. Curator(s): J. Alves; Protein involved in oxidoreductase activity; Belongs to the glutathione peroxidase family.
      
 0.503
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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