Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rgpDABC-type lipopolysaccharide transport system, ATPase component, putative; GC: 42.87%; Transporter classification TC:3.A.1.103.1. Codon Adaptation Index (CAI): 0.809. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity. (401 aa)    
Predicted Functional Partners:
rgpC
ABC-type lipopolysaccharide transport system, permease component, putative; GC: 40.4%; Transporter classification TC:3.A.1.103.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.774. Curator(s): J. Alves; Protein involved in ATPase activity, coupled to transmembrane movement of substances.
 
   
 0.968
rgpFc
Lipopolysaccharide biosynthesis protein, putative; GC: 41.77%; Codon Adaptation Index (CAI): 0.777; Protein involved in transferase activity.
 
   
 0.908
rgpB
Polysaccharide biosynthesis protein/ rhamnosyltransferase, putative; GC: 45.19%; Codon Adaptation Index (CAI): 0.792; Protein involved in transferase activity.
 
 
   0.892
rgpA
Rhamnosyltransferase, putative; GC: 43.69%; Codon Adaptation Index (CAI): 0.79; Protein involved in transferase activity.
   
 
 0.848
SSA_1505
Conserved hypothetical protein; GC: 39.42%; Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.778. Partially similar to phosphoglycerol transferase-like proteins, alkaline phosphatase superfamily. Curator(s): J. Alves; Protein involved in sulfuric ester hydrolase activity and transferase activity.
       0.808
SSA_1512
Membrane protein, putative; GC: 42.48%; Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.76.
 
     0.715
SSA_1516
Cell-wall biogenesis glycosyltransferase, putative; GC: 40%; Transporter classification TC:9.B.32.1.3. Codon Adaptation Index (CAI): 0.818; Protein involved in transferase activity.
 
 
   0.647
SSA_1514
Cell-wall biogenesis glycosyltransferase, putative; GC: 40.9%; Codon Adaptation Index (CAI): 0.798; Protein involved in transferase activity.
 
 
 
 0.646
rgpF
Glycosyltransferase, putative; GC: 41.62%; Transporter classification TC:9.B.32.1.3. Codon Adaptation Index (CAI): 0.781. Curator(s): T. Kitten; Protein involved in transferase activity and transferase activity, transferring glycosyl groups.
 
   0.635
SSA_1519
Polysaccharide/teichoic acid transporter, putative; GC: 28.55%; Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.753. SignalP prediction: Yes (prob. 0.989).
 
    0.628
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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