STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rncSRibonuclease III, putative; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (232 aa)    
Predicted Functional Partners:
ftsY
SRPR, signal recognition particle-docking protein, putative; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
  
  
 0.908
rplS
50S ribosomal protein L19, putative; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
 0.904
rpsP
30S ribosomal protein S16, putative; GC: 39.93%; Codon Adaptation Index (CAI): 0.801; Protein involved in protein biosynthesis; Belongs to the bacterial ribosomal protein bS16 family.
 
 
 0.903
rpsI
30S ribosomal protein S9, putative; GC: 45.8%; Codon Adaptation Index (CAI): 0.784; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.883
rpmA
50S ribosomal protein L27, putative; GC: 45.92%; Codon Adaptation Index (CAI): 0.795; Protein involved in protein biosynthesis; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.881
rpsO
30S ribosomal protein S15, putative; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.880
rpmF
50S ribosomal protein L32, putative; GC: 48.09%; Codon Adaptation Index (CAI): 0.761; Belongs to the bacterial ribosomal protein bL32 family.
  
  0.875
rplM
50S ribosomal protein L13, putative; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.874
rplQ
50S ribosomal protein L17, putative; GC: 43.41%; Codon Adaptation Index (CAI): 0.826. Curator(s): M. Serrano; Protein involved in protein biosynthesis.
   
 0.869
smc
Structural maintenance of chromosome protein (chromosome segregation ATPase), putative; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
   0.869
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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