STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1573Hypothetical protein; GC: 36.85%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.77. (160 aa)    
Predicted Functional Partners:
SSA_1574
Glycosyl transferase, family 1, putative; GC: 44.37%; Codon Adaptation Index (CAI): 0.767; Protein involved in transferase activity, 1,2-diacylglycerol 3-glucosyltransferase activity and biosynthesis.
       0.572
cpoA
Glycosyl transferase, putative; GC: 44.95%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.776; Protein involved in transferase activity and biosynthesis.
       0.572
thrS
Threonyl-tRNA synthetase, putative; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).
       0.480
SSA_1572
Conserved hypothetical protein; GC: 41.08%; Codon Adaptation Index (CAI): 0.754.
       0.480
ccpA
Catabolite control protein A, putative; GC: 43.08%; Codon Adaptation Index (CAI): 0.795. Helix-turn-helix prediction: AraC; Protein involved in regulation of transcription.
       0.440
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.