SSA_1600 protein (Streptococcus sanguinis SK36)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SSA_1600

Hypothetical protein; GC: 40.4%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.732. Curator(s): J. Alves. (32 aa)

Predicted Functional Partners:

smpB

0.773

vacB

0.773

SSA_1603

0.645

SSA_1599

0.556

secG

0.400

Your Current Organism:

Streptococcus sanguinis SK36

NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SSA_1599	SSA_1600	SSA_1599	SSA_1600	Hypothetical protein; GC: 32.62%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.757. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves.	Hypothetical protein; GC: 40.4%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.732. Curator(s): J. Alves.	0.556
SSA_1599	SSA_1603	SSA_1599	SSA_1603	Hypothetical protein; GC: 32.62%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.757. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves.	Conserved hypothetical protein; GC: 33.01%; Codon Adaptation Index (CAI): 0.744.	0.472
SSA_1599	smpB	SSA_1599	SSA_1601	Hypothetical protein; GC: 32.62%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.757. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves.	VacB-like protein, putative; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then swit [...]	0.556
SSA_1599	vacB	SSA_1599	SSA_1602	Hypothetical protein; GC: 32.62%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.757. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves.	Exoribonuclease, VacB/Rnb family, putative; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.556
SSA_1600	SSA_1599	SSA_1600	SSA_1599	Hypothetical protein; GC: 40.4%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.732. Curator(s): J. Alves.	Hypothetical protein; GC: 32.62%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.757. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves.	0.556
SSA_1600	SSA_1603	SSA_1600	SSA_1603	Hypothetical protein; GC: 40.4%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.732. Curator(s): J. Alves.	Conserved hypothetical protein; GC: 33.01%; Codon Adaptation Index (CAI): 0.744.	0.645
SSA_1600	secG	SSA_1600	SSA_1604	Hypothetical protein; GC: 40.4%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.732. Curator(s): J. Alves.	Protein-export membrane protein secG, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	0.400
SSA_1600	smpB	SSA_1600	SSA_1601	Hypothetical protein; GC: 40.4%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.732. Curator(s): J. Alves.	VacB-like protein, putative; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then swit [...]	0.773
SSA_1600	vacB	SSA_1600	SSA_1602	Hypothetical protein; GC: 40.4%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.732. Curator(s): J. Alves.	Exoribonuclease, VacB/Rnb family, putative; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.773
SSA_1603	SSA_1599	SSA_1603	SSA_1599	Conserved hypothetical protein; GC: 33.01%; Codon Adaptation Index (CAI): 0.744.	Hypothetical protein; GC: 32.62%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.757. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves.	0.472
SSA_1603	SSA_1600	SSA_1603	SSA_1600	Conserved hypothetical protein; GC: 33.01%; Codon Adaptation Index (CAI): 0.744.	Hypothetical protein; GC: 40.4%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.732. Curator(s): J. Alves.	0.645
SSA_1603	secG	SSA_1603	SSA_1604	Conserved hypothetical protein; GC: 33.01%; Codon Adaptation Index (CAI): 0.744.	Protein-export membrane protein secG, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	0.467
SSA_1603	smpB	SSA_1603	SSA_1601	Conserved hypothetical protein; GC: 33.01%; Codon Adaptation Index (CAI): 0.744.	VacB-like protein, putative; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then swit [...]	0.645
SSA_1603	vacB	SSA_1603	SSA_1602	Conserved hypothetical protein; GC: 33.01%; Codon Adaptation Index (CAI): 0.744.	Exoribonuclease, VacB/Rnb family, putative; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.645
secG	SSA_1600	SSA_1604	SSA_1600	Protein-export membrane protein secG, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	Hypothetical protein; GC: 40.4%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.732. Curator(s): J. Alves.	0.400
secG	SSA_1603	SSA_1604	SSA_1603	Protein-export membrane protein secG, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	Conserved hypothetical protein; GC: 33.01%; Codon Adaptation Index (CAI): 0.744.	0.467
secG	smpB	SSA_1604	SSA_1601	Protein-export membrane protein secG, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	VacB-like protein, putative; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then swit [...]	0.768
secG	vacB	SSA_1604	SSA_1602	Protein-export membrane protein secG, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	Exoribonuclease, VacB/Rnb family, putative; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.689
smpB	SSA_1599	SSA_1601	SSA_1599	VacB-like protein, putative; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then swit [...]	Hypothetical protein; GC: 32.62%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.757. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): J. Alves.	0.556
smpB	SSA_1600	SSA_1601	SSA_1600	VacB-like protein, putative; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then swit [...]	Hypothetical protein; GC: 40.4%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.732. Curator(s): J. Alves.	0.773

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Textmining

Co-occurrence

Experiments

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About