STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSA_1645Conserved hypothetical protein; GC: 42.9%; Codon Adaptation Index (CAI): 0.762. (208 aa)    
Predicted Functional Partners:
SSA_1644
Hypothetical protein; GC: 35.37%; Codon Adaptation Index (CAI): 0.725.
       0.773
SSA_1648
Conserved hypothetical protein; GC: 46.24%; Codon Adaptation Index (CAI): 0.764; Protein involved in N-acetyltransferase activity.
 
     0.601
SSA_1646
Conserved hypothetical protein; GC: 47.33%; Codon Adaptation Index (CAI): 0.789.
  
    0.544
mefE
Macrolide-efflux protein, putative; GC: 45.79%; Transporter classification TC:2.A.1.21.1. Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.759. Curator(s): D. Akan, J. Alves.
 
     0.473
SSA_0607
ABC transporter, permease component, putative; GC: 46.94%; Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.754. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999); Curator(s): D. Akan, J. Alves.
 
     0.472
SSA_2385
Conserved hypothetical protein; GC: 35.2%; Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.725. SignalP prediction: Yes (prob. 0.874); Weak similarity to partial Mg/Co/Ni transporter domain. Curator(s): T. Kitten, J. Alves.
 
     0.459
SSA_1649
Conserved hypothetical transmembrane protein; GC: 43.02%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.765. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.589); Protein involved in glycerophosphodiester phosphodiesterase activity.
  
    0.449
SSA_1643
Hypothetical protein; GC: 40.76%; Codon Adaptation Index (CAI): 0.81.
       0.444
SSA_1647
Hypothetical protein; GC: 37.93%; Codon Adaptation Index (CAI): 0.806.
       0.437
FabG
3-Ketoacyl-ACP reductase, putative; GC: 50.21%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.786. LipoP prediction: SpI. Helix-turn-helix prediction: AraC; Protein involved in oxidoreductase activity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.437
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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