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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpbACollagen-binding protein A; GC: 43.92%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.776. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): T. Kitten. (1511 aa)    
Predicted Functional Partners:
SSA_2282
Phage infection protein, putative; GC: 40.76%; Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.795. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1).
  
     0.492
SSA_0805
Collagen-binding surface protein, putative; GC: 41.74%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.794. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): X. Ge.
  
   
0.489
SSA_2283
Conserved uncharacterized protein; GC: 35.76%; Codon Adaptation Index (CAI): 0.829. Curator(s): J. Alves; Belongs to the WXG100 family.
  
     0.482
SSA_0227
Collagen-binding surface protein, putative; GC: 43.58%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.797. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1); Curator(s): P. Manque, T. Kitten.
  
   
0.472
SSA_1662
NADH-dependent oxidoreductase, putative; GC: 45.37%; Codon Adaptation Index (CAI): 0.783; Protein involved in oxidoreductase activity.
       0.467
SSA_2277
DNA segregation ATPase FtsK/SpoIIIE family protein, putative; GC: 49.69%; Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.747. Helix-turn-helix prediction: AraC. Curator(s): J. Alves; Protein involved in nucleoside-triphosphatase activity.
  
    0.422
ukp
Ukp protein, putative; GC: 45.48%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.791.
  
     0.420
SSA_1019
Collagen-binding surface protein, putative; GC: 42.42%; Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.8. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1).
  
   
0.413
pykF
Pyruvate kinase I, fructose-stimulated, putative; GC: 42.36%; Codon Adaptation Index (CAI): 0.802. Curator(s): L. Ozaki; Protein involved in transferase activity and glycolysis; Belongs to the pyruvate kinase family.
   
    0.405
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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